ColabFold - Making protein folding accessible to all via Google Colab
ColabDesign - Design proteins using TrRosetta, RosettaFold and AlphaFold
SMURF - End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman
AF2Rank - State-of-the-Art Estimation of Protein Model Accuracy using AlphaFold
GREMLIN - Web-server and database for predicting contacts.
seqsal - What do generative models learn from protein sequences?
seqmodels - Unified framework for modeling multivariate distributions in biological sequences
map_align - contact map alignment
AF2BIND - Lightweight and fast prediction of ligand-binding sites