• ColabFold - Making protein folding accessible to all via Google Colab

    • ColabDesign - Design proteins using TrRosetta, RosettaFold and AlphaFold

    • SMURF - End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman

    • AF2Rank - State-of-the-Art Estimation of Protein Model Accuracy using AlphaFold

    • GREMLIN - Web-server and database for predicting contacts.

    • seqsal - What do generative models learn from protein sequences?

    • seqmodels - Unified framework for modeling multivariate distributions in biological sequences

    • map_align - contact map alignment