Tools

• • ColabFold - Making protein folding accessible to all via Google Colab

  • ColabDesign - Design proteins using TrRosetta, RosettaFold and AlphaFold

  • GREMLIN - Web-server and database for predicting contacts.

    • For source code see: C++, Python (Tensorflow), Python (Jax)

  • map_align - contact map alignment

  • seqsal - What do generative models learn from protein sequences?

  • seqmodels - Unified framework for modeling multivariate distributions in biological sequences